Overall I am happy with what this has achieved, extending the wavelength range with better SNR into the UV and IR, going from typically 22 orders (32 to 53) to 32 orders (29 to 60), a 45% gain!

The first problem I've found is that there is a small gap, typically only a few Angstroms, between most orders. See last image below.
The only explanation I've found is that the FOV of the QHY268M camera (with IMX571, 28.43mm diag CMOS), similar to the ZWO ASI2600MM, may be cutting off the ends of the orders (see middle thorium image below). If this is the reason then I am to blame in trying to save money by not getting a camera with the larger IMX455 (36.24mm diag), as in the ZWO ASI2600MM or QHY600M and as used by Christian.
The next problem is the merged orders spectrum made by ISIS. As the first image below shows, there is a significant wavelength shift or error, clearly shown by the Balmer lines. I've tried various software option but without success. Could it be caused by the 'cramped' spectrum image, or is it a bug?
(Sorry, but the three images are in the reverse order I intended and I don't know how to change that)
Any/all comments welcome as to how to fix these problems.
Cheers,
Bernard